ZipperPlot
Run analysis
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Run analysis
Manual
Contact
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Run pre-existing example
low_priority
35 Refseq lncRNAs
low_priority
35 random locations
or use your own input
e.g. chr3 47205859 +
Upload file
attach_file
Possible input formats (tab-separated columns):
chr12 3884608 +
chr12 3884608 + lnc-PRMT8-4:1
FANTOM5 data
CAGE-seq data
ROADMAP epigenomics data
all sample types
Each genomic feature is analyzed across all samples (sample in which the peak is most closely associated to the genomic feature is retained)
1 sample type
User knows in which tissue the set of genomic features are more likely to be expressed
Sample type
All peaks
narrow peak
broad peak
gapped peak
Chromatin marks might generate large regions of enriched signal (
broad peaks
) or peaks of a few hundred base pairs (
narrow peaks
). Moreover,
gapped peaks
arise in regions that may be spliced.
Chromatin marks might generate large regions of enriched signal (
broad peaks
) or peaks of a few hundred base pairs (
narrow peaks
). Moreover,
gapped peaks
arise in regions that may be spliced.
Chromatin marks might generate large regions of enriched signal (
broad peaks
) or peaks of a few hundred base pairs (
narrow peaks
). Moreover,
gapped peaks
arise in regions that may be spliced.
Mark
all sample types
Each genomic feature is analyzed across all samples (sample in which the peak is most closely associated to the genomic feature is retained)
1 sample type
User knows in which tissue the set of genomic features are more likely to be expressed
Sample type
Number of random Zipper plots to compute AUZ_pval
100 permutations
1000 permutations
Zipper width (nucleotides)
Input is not a number!
By default, the Zipper plot is displayed in a +/- 5kb window from the TSS
Calculate TSS p-value
Sample types with a peak as close (or closer) to the TSS than the one found in the chosen sample type
Run analysis